Arrangement of Tractates in Shas

The Rambam explains the logic of arranging the tractates in the Shas so that in principle it is according to the order in which the commandments appear in the Torah unless there is a special reason, for example, Yevamot appears first in the order of women because Yevam is obligatory or a pioneer or Yevam and it can be forced on a person like that, but marriage cannot be forced on a person, and therefore it is appropriate that something that is obligatory should precede something that has a kind of “permissible side” (that is roughly what the Rambam said). I don’t understand, because even God knows that there is a reason to arrange the tractates in the Torah in a certain order, but he nevertheless chose to place the commandment of Yevam almost at the end of the Torah – so why did the Rabbi still not adhere to the “divine logic” in the Torah and develop a type of order with a different logical pattern?